Transcript: LINC01876:27

Basic information

LNCipedia transcript ID: LINC01876:27 
HGNC Gene Symbol: LINC01876    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1876
Ensembl Gene ID: ENSG00000226383
Ensembl Transcript ID: ENST00000428651
Location (hg38): chr2:156020535-156024576
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1603 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000428651; ENST00000428651.1; AC093375.1-002; OTTHUMT00000332615.1; NONHSAT147118
Alternative gene names: ENSG00000226383; AC093375.1; ENSG00000226383.1; OTTHUMG00000153834.1; ENSG00000226383.5; ENSG00000226383.6; LINC01876


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -133.4918 non-coding 
CPAT coding probability 0.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01876:27 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NR4A2-2:2
3.1 lnc-NR4A2-2:2
4.0 lnc-NR4A2-2:2
4.1 lnc-NR4A2-2:2
5.0 lnc-NR4A2-2:2
5.1 LINC01876:14
5.2 LINC01876:27