Transcript: LINC01877:10

Basic information

LNCipedia transcript ID: LINC01877:10 
HGNC Gene Symbol: LINC01877    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1877
Ensembl Gene ID: ENSG00000238217
Ensembl Transcript ID: ENST00000439734
Location (hg38): chr2:199624531-199659132
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2287 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000439734; ENST00000439734.1; AC093590.1-001; OTTHUMT00000335491.2; NONHSAT076262; ENST00000439734.5
Alternative gene names: ENSG00000238217; AC093590.1; ENSG00000238217.1; OTTHUMG00000154493.2; ENSG00000238217.5; LINC01877


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.0999 non-coding 
CPAT coding probability 0.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01877:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C2orf69-2:3
3.1 lnc-C2orf69-2:3
4.0 lnc-C2orf69-2:3
4.1 lnc-C2orf69-2:3
5.0 lnc-C2orf69-2:3
5.1 LINC01877:5
5.2 LINC01877:10