Transcript: LINC01880:18

Basic information

LNCipedia transcript ID: LINC01880:18 
LNCipedia gene ID: LINC01880
Location (hg38): chr2:242057778-242084229
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1464 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00005378; NONHSAT078024
Alternative gene names: XLOC_002560; linc-PDCD1-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 45.0636 non-coding 
CPAT coding probability 53.17% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01880:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC131097.4.1-3:5
3.1 lnc-AC131097.4.1-3:4
4.0 lnc-AC131097.4.1-3:4
4.1 lnc-AC131097.4.1-3:4
5.0 lnc-AC131097.4.1-3:4
5.1 LINC01880:8
5.2 LINC01880:18