Transcript: LINC01888:5

Basic information

LNCipedia transcript ID: LINC01888:5 
HGNC Gene Symbol: LINC01888    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1888
Ensembl Gene ID: ENSG00000237576
Ensembl Transcript ID: ENST00000415138
Location (hg38): chr2:68832044-68837708
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 436 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002930; ENST00000415138.1; AC097495.2-001; OTTHUMT00000327034.1; NONHSAT071323
Alternative gene names: XLOC_001517; linc-GKN1; ENSG00000237576.1; AC097495.2; OTTHUMG00000152623.1; LINC01888


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -140.2444 non-coding 
CPAT coding probability 1.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01888:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARHGAP25-1:1
3.1 lnc-ARHGAP25-1:1
4.0 lnc-ARHGAP25-1:1
4.1 lnc-ARHGAP25-1:1
5.0 lnc-ARHGAP25-1:1
5.1 LINC01888:2
5.2 LINC01888:5