Transcript: LINC01906:3

Basic information

LNCipedia transcript ID: LINC01906:3 
HGNC Gene Symbol: LINC01906    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1906
Ensembl Gene ID: ENSG00000265786
Ensembl Transcript ID: ENST00000582962
Location (hg38): chr18:14877611-14884052
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 499 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000582962.1; RP11-527H14.6-001; OTTHUMT00000443398.1; NONHSAT058536
Alternative gene names: ENSG00000265786.1; RP11-527H14.6; OTTHUMG00000178808.1; LINC01906


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.4041 non-coding 
CPAT coding probability 1.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01906:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKRD30B-1:1
4.0 lnc-ANKRD30B-1:1
4.1 lnc-ANKRD30B-1:1
5.0 lnc-ANKRD30B-1:1
5.1 LINC01906:2
5.2 LINC01906:3