Transcript: LINC01909:12

Basic information

LNCipedia transcript ID: LINC01909:12 
HGNC Gene Symbol: LINC01909    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1909
Ensembl Gene ID: ENSG00000266258
Ensembl Transcript ID: ENST00000584919
RefSeq ID: NR_126336
Location (hg38): chr18:70335439-70352459
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 815 bp
Exons: 4
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_126336; ENST00000584919.1; NR_126336.1
Alternative gene names: ENSG00000266258.1; RP11-41O4.1; LINC01909; LOC101927481


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -44.3526 non-coding 
CPAT coding probability 2.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01909:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SOCS6-1:7
4.0 lnc-SOCS6-1:7
4.1 lnc-SOCS6-1:7
5.0 lnc-SOCS6-1:7
5.1 LINC01909:5
5.2 LINC01909:12