Transcript: LINC01915:6

Basic information

LNCipedia transcript ID: LINC01915:6 
HGNC Gene Symbol: LINC01915    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1915
Ensembl Gene ID: ENSG00000265485
Ensembl Transcript ID: ENST00000577994
RefSeq ID: NR_040033
Location (hg38): chr18:24628182-24662198
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2321 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000500155; TCONS_00026189; ENST00000577994.1; RP11-449D8.1-001; OTTHUMT00000446753.1; NR_040033; ENST00000577994.5; NR_040033.1
Alternative gene names: ENSG00000246302; XLOC_012644; linc-PSMA8-3; AC022884.1; ENSG00000265485.1; RP11-449D8.1; OTTHUMG00000179501.1; ENSG00000265485.5; LINC01915; LOC729950


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.1126 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01915:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HRH4-3:1
3.1 lnc-HRH4-4:1
4.0 lnc-HRH4-4:1
4.1 lnc-HRH4-4:1
5.0 lnc-HRH4-4:1
5.1 LINC01915:3
5.2 LINC01915:6