Transcript: LINC01917:6

Basic information

LNCipedia transcript ID: LINC01917:6 
HGNC Gene Symbol: LINC01917    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1917
Ensembl Gene ID: ENSG00000260433
Ensembl Transcript ID: ENST00000565170
RefSeq ID: NR_110800
Location (hg38): chr18:53579623-53581059
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1037 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000565170.1; RP11-202D1.2-001; OTTHUMT00000431610.1; NR_110800; NR_110800.1
Alternative gene names: ENSG00000260433.1; RP11-202D1.2; OTTHUMG00000176187.1; LINC01917; LOC101928167


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -138.5136 non-coding 
CPAT coding probability 15.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01917:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MBD2-1:1
4.0 lnc-MBD2-1:1
4.1 lnc-MBD2-1:1
5.0 lnc-MBD2-1:1
5.1 LINC01917:3
5.2 LINC01917:6