Transcript: LINC01922:6

Basic information

LNCipedia transcript ID: LINC01922:6 
HGNC Gene Symbol: LINC01922    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1922
Ensembl Gene ID: ENSG00000259779
Ensembl Transcript ID: ENST00000562582
Location (hg38): chr18:74409415-74410133
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 719 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562582.1; RP11-231E4.2-002; OTTHUMT00000431632.1; NONHSAT059870
Alternative gene names: ENSG00000259779.1; RP11-231E4.2; OTTHUMG00000176209.1; LINC01922


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.191 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01922:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C18orf63-1:1
4.0 lnc-C18orf63-1:1
4.1 lnc-C18orf63-1:1
5.0 lnc-C18orf63-1:1
5.1 LINC01922:3
5.2 LINC01922:6