Transcript: LINC01931:5

Basic information

LNCipedia transcript ID: LINC01931:5 
HGNC Gene Symbol: LINC01931    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1931
Ensembl Gene ID: ENSG00000162947
Ensembl Transcript ID: ENST00000295052
Location (hg38): chr2:149767506-149859191
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1832 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003417; ENST00000295052; ENST00000295052.3; AC007364.1-001; OTTHUMT00000332309.2; NONHSAT074911
Alternative gene names: XLOC_002352; linc-MMADHC-2; ENSG00000162947; AC007364.1; ENSG00000162947.4; OTTHUMG00000153746.2; LINC01931


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.7732 non-coding 
CPAT coding probability 7.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01931:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MMADHC-1:1
3.1 lnc-MMADHC-1:1
4.0 lnc-MMADHC-1:1
4.1 lnc-MMADHC-1:1
5.0 lnc-MMADHC-1:1
5.1 LINC01931:2
5.2 LINC01931:5