Transcript: LINC01936:17

Basic information

LNCipedia transcript ID: LINC01936:17 
LNCipedia gene ID: LINC01936
Location (hg38): chr2:30332550-30359556
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1532 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004739; NONHSAT069901
Alternative gene names: XLOC_001412; linc-LCLAT1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.3138 non-coding 
CPAT coding probability 5.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01936:17 no no no no

Available literature

  1. Li (2015), Expression of long non-coding RNA DLX6-AS1 in lung adenocarcinoma., Cancer Cell Int.
  2. Li (2015), Study on expression of lncRNA RGMB-AS1 and repulsive guidance molecule b in non-small cell lung cancer., Diagn Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LBH-2:2
3.1 lnc-LBH-2:2
4.0 lnc-LBH-2:2
4.1 lnc-LBH-2:2
5.0 lnc-LBH-2:2
5.1 LINC01936:3
5.2 LINC01936:17