Transcript: LINC01936:25

Basic information

LNCipedia transcript ID: LINC01936:25 
HGNC Gene Symbol: LINC01936    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1936
Ensembl Gene ID: ENSG00000235997
Ensembl Transcript ID: ENST00000421976
Location (hg38): chr2:30346659-30352431
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2952 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000421976; ENST00000421976.2; AC109642.1-002; OTTHUMT00000396916.1; NONHSAT069908
Alternative gene names: ENSG00000235997; AC109642.1; ENSG00000235997.2; OTTHUMG00000152052.3; LINC01936


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.3138 non-coding 
CPAT coding probability 5.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01936:25 no no no no

Available literature

  1. Li (2015), Expression of long non-coding RNA DLX6-AS1 in lung adenocarcinoma., Cancer Cell Int.
  2. Li (2015), Study on expression of lncRNA RGMB-AS1 and repulsive guidance molecule b in non-small cell lung cancer., Diagn Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LBH-2:5
3.1 lnc-LBH-2:4
4.0 lnc-LBH-2:4
4.1 lnc-LBH-2:4
5.0 lnc-LBH-2:4
5.1 LINC01936:11
5.2 LINC01936:25