Transcript: LINC01940:14

Basic information

LNCipedia transcript ID: LINC01940:14 
LNCipedia gene ID: LINC01940
Location (hg38): chr2:238919302-238926269
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3485 bp
Exons: 9
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000540922; ENST00000540922.1; AC114788.2-201; NONHSAT077769
Alternative gene names: ENSG00000227744; AC114788.2; ENSG00000227744.3; OTTHUMG00000152837.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.0637 non-coding 
CPAT coding probability 99.27% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01940:14 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HDAC4-2:2
3.1 lnc-HDAC4-3:1
4.0 lnc-HDAC4-3:1
4.1 lnc-HDAC4-3:1
5.0 lnc-HDAC4-3:1
5.1 LINC01940:7
5.2 LINC01940:14