Transcript: LINC01940:15

Basic information

LNCipedia transcript ID: LINC01940:15 
LNCipedia gene ID: LINC01940
Location (hg38): chr2:238919340-238920556
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 366 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00004625
Alternative gene names: XLOC_002539; linc-PER2-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.9647 non-coding 
CPAT coding probability 2.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01940:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HDAC4-2:3
3.1 lnc-HDAC4-3:3
4.0 lnc-HDAC4-3:3
4.1 lnc-HDAC4-3:3
5.0 lnc-HDAC4-3:3
5.1 LINC01940:8
5.2 LINC01940:15