Transcript: LINC01941:3

Basic information

LNCipedia transcript ID: LINC01941:3 
HGNC Gene Symbol: LINC01941    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1941
Ensembl Gene ID: ENSG00000226813
Ensembl Transcript ID: ENST00000455174
Location (hg38): chr2:126110099-126117985
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 624 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003398; ENST00000455174; ENST00000455174.2; AC114813.1-001; OTTHUMT00000330992.2; NONHSAT074126
Alternative gene names: XLOC_002308; linc-MKI67IP-8; ENSG00000226813; AC114813.1; ENSG00000226813.2; OTTHUMG00000153386.2; LINC01941


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.0064 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01941:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BIN1-1:1
3.1 lnc-BIN1-2:1
4.0 lnc-BIN1-2:1
4.1 lnc-BIN1-2:1
5.0 lnc-BIN1-2:1
5.1 LINC01941:2
5.2 LINC01941:3