Transcript: LINC01942:15

Basic information

LNCipedia transcript ID: LINC01942:15 
LNCipedia gene ID: LINC01942
Location (hg38): chr5:173701535-173708196
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 618 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010181; NONHSAT105202
Alternative gene names: XLOC_004643; linc-CPEB4-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.1644 non-coding 
CPAT coding probability 2.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01942:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CPEB4-2:2
3.1 lnc-CPEB4-2:2
4.0 lnc-CPEB4-2:2
4.1 lnc-CPEB4-2:2
5.0 lnc-CPEB4-2:2
5.1 LINC01942:8
5.2 LINC01942:15