Transcript: LINC01946:3

Basic information

LNCipedia transcript ID: LINC01946:3 
HGNC Gene Symbol: LINC01946    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1946
Ensembl Gene ID: ENSG00000223647
Ensembl Transcript ID: ENST00000416279
Location (hg38): chr2:31793823-31803980
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 418 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003249; ENST00000416279; ENST00000416279.1; AL133249.1-001; OTTHUMT00000325123.1; NONHSAT069955
Alternative gene names: XLOC_002044; linc-SRD5A2-1; ENSG00000223647; AL133249.1; ENSG00000223647.1; OTTHUMG00000152056.1; LINC01946


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.874 non-coding 
CPAT coding probability 1.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01946:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DPY30-1:1
3.1 lnc-DPY30-1:1
4.0 lnc-DPY30-1:1
4.1 lnc-DPY30-1:1
5.0 lnc-DPY30-1:1
5.1 LINC01946:2
5.2 LINC01946:3