Transcript: LINC01947:4

Basic information

LNCipedia transcript ID: LINC01947:4 
HGNC Gene Symbol: LINC01947    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1947
Ensembl Gene ID: ENSG00000254130
Ensembl Transcript ID: ENST00000523742
RefSeq ID: NR_108020
Location (hg38): chr5:166905222-166926370
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 566 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000523742; ENST00000523742.1; CTB-7E3.1-001; OTTHUMT00000370980.1; NONHSAT104964; NR_108020; NR_108020.1
Alternative gene names: ENSG00000254130; CTB-7E3.1; ENSG00000254130.1; OTTHUMG00000162904.1; LINC01947


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.0738 non-coding 
CPAT coding probability 1.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01947:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PANK3-4:1
3.1 lnc-PANK3-12:1
4.0 lnc-PANK3-12:1
4.1 lnc-PANK3-12:1
5.0 lnc-PANK3-12:1
5.1 LINC01947:2
5.2 LINC01947:4