Transcript: LINC01947:5

Basic information

LNCipedia transcript ID: LINC01947:5 
LNCipedia gene ID: LINC01947
Location (hg38): chr5:166904939-166907976
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 406 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010544; NONHSAT104963
Alternative gene names: XLOC_005072; linc-NUDCD2-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -193.8624 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01947:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PANK3-4:2
3.1 lnc-PANK3-12:2
4.0 lnc-PANK3-12:2
4.1 lnc-PANK3-12:2
5.0 lnc-PANK3-12:2
5.1 LINC01947:3
5.2 LINC01947:5