Transcript: LINC01949:6

Basic information

LNCipedia transcript ID: LINC01949:6 
HGNC Gene Symbol: LINC01949    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1949
Ensembl Gene ID: ENSG00000233828
Ensembl Transcript ID: ENST00000611331
Location (hg38): chr5:87205408-87240145
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1618 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000611331.1
Alternative gene names: ENSG00000233828.3; CTC-242N15.1; LINC01949


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 4.1314 non-coding 
CPAT coding probability 0.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01949:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC008394.1-3:2
4.1 lnc-AC008394.1-3:2
5.0 lnc-AC008394.1-3:2
5.1 LINC01949:2
5.2 LINC01949:6