Transcript: LINC01959:5

Basic information

LNCipedia transcript ID: LINC01959:5 
LNCipedia gene ID: LINC01959
RefSeq ID: NR_027127
Location (hg38): chr5:135648683-135653935
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2042 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_027127; NR_027127.1
Alternative gene names: LOC340074


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.3237 non-coding 
CPAT coding probability 12.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01959:5 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CXCL14-1:2
4.0 lnc-CXCL14-1:2
4.1 lnc-CXCL14-1:2
5.0 lnc-CXCL14-1:2
5.1 LINC01959:3
5.2 LINC01959:5