Transcript: LINC01960:4

Basic information

LNCipedia transcript ID: LINC01960:4 
HGNC Gene Symbol: LINC01960    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1960
Ensembl Gene ID: ENSG00000260868
Ensembl Transcript ID: ENST00000563759
Location (hg38): chr2:174025280-174027163
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1884 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563759.1; RP11-394I13.1-001; OTTHUMT00000431692.1; NONHSAT075549
Alternative gene names: ENSG00000260868.1; RP11-394I13.1; OTTHUMG00000176260.1; LINC01960


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -127.2993 non-coding 
CPAT coding probability 79.04% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01960:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SP9-2:1
4.0 lnc-SP9-2:1
4.1 lnc-SP9-2:1
5.0 lnc-SP9-2:1
5.1 LINC01960:2
5.2 LINC01960:4