Transcript: LINC01963:12

Basic information

LNCipedia transcript ID: LINC01963:12 
HGNC Gene Symbol: LINC01963    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1963
Ensembl Gene ID: ENSG00000260804
Ensembl Transcript ID: ENST00000562038
Location (hg38): chr2:216217045-216220192
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3148 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562038.1; RP11-566E18.3-001; OTTHUMT00000431729.1
Alternative gene names: ENSG00000260804.1; RP11-566E18.3; OTTHUMG00000176293.1; ENSG00000260804.2; ENSG00000260804.3; PKI55; LINC01963


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.0373 non-coding 
CPAT coding probability 4.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01963:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-XRCC5-1:2
4.0 lnc-XRCC5-1:2
4.1 lnc-XRCC5-1:2
5.0 lnc-XRCC5-1:2
5.1 LINC01963:6
5.2 LINC01963:12