Transcript: LINC01969:15

Basic information

LNCipedia transcript ID: LINC01969:15 
LNCipedia gene ID: LINC01969
Ensembl Gene ID: ENSG00000249406
Ensembl Transcript ID: ENST00000509943
Location (hg38): chr17:50208972-50214459
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 839 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00025184; ENST00000509943; ENST00000509943.1; RP11-893F2.5-001; OTTHUMT00000367043.1; NONHSAT054619
Alternative gene names: XLOC_012240; linc-TMEM92-2; ENSG00000249406; RP11-893F2.5; ENSG00000249406.1; OTTHUMG00000162055.1; AC015909.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.0894 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01969:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SGCA-2:1
3.1 lnc-SGCA-2:1
4.0 lnc-SGCA-2:1
4.1 lnc-SGCA-3:8
5.0 lnc-SGCA-3:8
5.1 LINC01969:7
5.2 LINC01969:15