Transcript: LINC01969:17

Basic information

LNCipedia transcript ID: LINC01969:17 
HGNC Gene Symbol: LINC01969    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1969
Ensembl Gene ID: ENSG00000251085
Ensembl Transcript ID: ENST00000514468
RefSeq ID: NR_110806
Location (hg38): chr17:50214694-50215420
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 455 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00025185; ENST00000514468; ENST00000514468.1; RP11-893F2.6-001; OTTHUMT00000367056.1; NONHSAT054622; NR_110806; NR_110806.1
Alternative gene names: XLOC_012241; linc-TMEM92-1; ENSG00000251085; RP11-893F2.6; ENSG00000251085.1; OTTHUMG00000162061.1; LINC01969; LOC101927230


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -274.751 non-coding 
CPAT coding probability 2.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01969:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SGCA-3:1
3.1 lnc-SGCA-3:1
4.0 lnc-SGCA-3:1
4.1 lnc-SGCA-3:1
5.0 lnc-SGCA-3:1
5.1 LINC01969:9
5.2 LINC01969:17