Transcript: LINC01977:10

Basic information

LNCipedia transcript ID: LINC01977:10 
HGNC Gene Symbol: LINC01977    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1977
Ensembl Gene ID: ENSG00000262772
Ensembl Transcript ID: ENST00000576963
Location (hg38): chr17:79823452-79827704
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1788 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000576963.1; RP11-353N14.2-001; OTTHUMT00000437044.1; NONHSAT056318
Alternative gene names: ENSG00000262772.1; RP11-353N14.2; OTTHUMG00000177465.1; LINC01977


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.8391 non-coding 
CPAT coding probability 25.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01977:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CBX2-3:1
4.0 lnc-CBX2-2:4
4.1 lnc-CBX2-2:4
5.0 lnc-CBX2-2:4
5.1 LINC01977:5
5.2 LINC01977:10