Transcript: LINC01978:14

Basic information

LNCipedia transcript ID: LINC01978:14 
LNCipedia gene ID: LINC01978
Location (hg38): chr17:79919357-79923994
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1524 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00025131
Alternative gene names: XLOC_012335; linc-CCDC40-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.8858 non-coding 
CPAT coding probability 1.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01978:14 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC40-1:1
3.1 lnc-CCDC40-2:2
4.0 lnc-CCDC40-2:2
4.1 lnc-CCDC40-2:2
5.0 lnc-CCDC40-2:2
5.1 LINC01978:3
5.2 LINC01978:14