Transcript: LINC01978:17

Basic information

LNCipedia transcript ID: LINC01978:17 
HGNC Gene Symbol: LINC01978    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1978
Ensembl Gene ID: ENSG00000262188
Ensembl Transcript ID: ENST00000572353
Location (hg38): chr17:79919374-79925462
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 540 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000572353.1; RP11-353N14.4-002; OTTHUMT00000437144.1
Alternative gene names: ENSG00000262188.1; RP11-353N14.4; OTTHUMG00000177488.1; LINC01978


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -123.7013 non-coding 
CPAT coding probability 1.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01978:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC40-2:3
4.0 lnc-CCDC40-2:3
4.1 lnc-CCDC40-2:3
5.0 lnc-CCDC40-2:3
5.1 LINC01978:6
5.2 LINC01978:17