Transcript: LINC01978:23

Basic information

LNCipedia transcript ID: LINC01978:23 
LNCipedia gene ID: LINC01978
Location (hg38): chr17:79919409-79925535
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 578 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00025523
Alternative gene names: XLOC_012335; linc-CCDC40-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -123.7013 non-coding 
CPAT coding probability 1.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01978:23 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC40-1:2
3.1 lnc-CCDC40-2:4
4.0 lnc-CCDC40-2:4
4.1 lnc-CCDC40-2:4
5.0 lnc-CCDC40-2:4
5.1 LINC01978:12
5.2 LINC01978:23