Transcript: LINC01979:4

Basic information

LNCipedia transcript ID: LINC01979:4 
LNCipedia gene ID: LINC01979
Location (hg38): chr17:79916185-79926725
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5111 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000507040; TCONS_00025255; NONHSAT056321
Alternative gene names: ENSG00000248706; XLOC_012583; linc-CBX4; AC100791.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.0902 non-coding 
CPAT coding probability 96.26% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01979:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TBC1D16-1:1
3.1 lnc-TBC1D16-1:2
4.0 lnc-TBC1D16-1:2
4.1 lnc-TBC1D16-1:2
5.0 lnc-TBC1D16-1:2
5.1 LINC01979:2
5.2 LINC01979:4