Transcript: LINC01979:5

Basic information

LNCipedia transcript ID: LINC01979:5 
HGNC Gene Symbol: LINC01979    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1979
Ensembl Gene ID: ENSG00000262585
Ensembl Transcript ID: ENST00000576738
RefSeq ID: NR_110850
Location (hg38): chr17:79915252-79926725
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5271 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000576738.1; RP11-353N14.5-001; OTTHUMT00000437142.1; NONHSAT056320; NR_110850; NR_110850.1
Alternative gene names: ENSG00000262585.1; RP11-353N14.5; OTTHUMG00000177487.1; LINC01979; LOC101928766


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.0902 non-coding 
CPAT coding probability 96.23% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01979:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TBC1D16-1:1
4.0 lnc-TBC1D16-1:1
4.1 lnc-TBC1D16-1:1
5.0 lnc-TBC1D16-1:1
5.1 LINC01979:3
5.2 LINC01979:5