Transcript: LINC01980:13

Basic information

LNCipedia transcript ID: LINC01980:13 
LNCipedia gene ID: LINC01980
Location (hg38): chr3:27802762-27860307
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 409 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006809; NONHSAT088770
Alternative gene names: XLOC_002603; linc-CMC1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -162.634 non-coding 
CPAT coding probability 5.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01980:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CMC1-1:1
3.1 lnc-CMC1-1:2
4.0 lnc-CMC1-1:2
4.1 lnc-CMC1-1:2
5.0 lnc-CMC1-1:2
5.1 LINC01980:4
5.2 LINC01980:13