Transcript: LINC01989:13

Basic information

LNCipedia transcript ID: LINC01989:13 
LNCipedia gene ID: LINC01989
RefSeq ID: NR_110748
Location (hg38): chr17:34169376-34183632
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1077 bp
Exons: 6
Sources: Broad Institute; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00025136; NR_110748; NR_110748.1
Alternative gene names: XLOC_012440; linc-ACCN1-2; LOC101927239


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -147.9883 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01989:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ACCN1-1:1
3.1 lnc-ACCN1-1:4
4.0 lnc-ACCN1-1:4
4.1 lnc-ACCN1-1:4
5.0 lnc-ACCN1-1:4
5.1 LINC01989:4
5.2 LINC01989:13