Transcript: LINC01989:17

Basic information

LNCipedia transcript ID: LINC01989:17 
LNCipedia gene ID: LINC01989
Location (hg38): chr17:34169377-34178854
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 489 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00026053
Alternative gene names: XLOC_012440; linc-ACCN1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -256.347 non-coding 
CPAT coding probability 2.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01989:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ACCN1-1:3
3.1 lnc-ACCN1-1:7
4.0 lnc-ACCN1-1:7
4.1 lnc-ACCN1-1:7
5.0 lnc-ACCN1-1:7
5.1 LINC01989:8
5.2 LINC01989:17