Transcript: LINC01990:13

Basic information

LNCipedia transcript ID: LINC01990:13 
HGNC Gene Symbol: LINC01990    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1990
Ensembl Gene ID: ENSG00000273125
Ensembl Transcript ID: ENST00000609293
RefSeq ID: NR_110039
Location (hg38): chr3:107430930-107463912
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1487 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT091052; NR_110039; ENST00000609293.1; NR_110039.1
Alternative gene names: ENSG00000273125.1; RP11-115H18.1; LINC01990; LOC101929607


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.9427 non-coding 
CPAT coding probability 11.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01990:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC54-1:2
4.0 lnc-CCDC54-1:2
4.1 lnc-CCDC54-1:2
5.0 lnc-CCDC54-1:2
5.1 LINC01990:7
5.2 LINC01990:13