Transcript: LINC01992:4

Basic information

LNCipedia transcript ID: LINC01992:4 
HGNC Gene Symbol: LINC01992    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1992
Ensembl Gene ID: ENSG00000260019
Ensembl Transcript ID: ENST00000567574
Location (hg38): chr17:27929548-27974223
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1340 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000510249; ENST00000567574.1; RP11-218F4.1-001; OTTHUMT00000431352.1
Alternative gene names: ENSG00000249243; ENSG00000260019.1; RP11-218F4.1; OTTHUMG00000175990.1; LINC01992


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -72.1482 non-coding 
CPAT coding probability 3.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01992:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C17orf108-1:1
3.1 lnc-C17orf108-1:1
4.0 lnc-C17orf108-1:1
4.1 lnc-C17orf108-1:1
5.0 lnc-C17orf108-1:1
5.1 LINC01992:2
5.2 LINC01992:4