Transcript: LINC01993:5

Basic information

LNCipedia transcript ID: LINC01993:5 
HGNC Gene Symbol: LINC01993    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1993
Ensembl Gene ID: ENSG00000204277
Ensembl Transcript ID: ENST00000374945
RefSeq ID: NR_073178
Location (hg38): chr17:78261349-78278492
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2934 bp
Exons: 7
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT056215; NR_073178; ENST00000374945.1; NR_073178.1
Alternative gene names: ENSG00000204277.1; RP11-219G17.4; LINC01993; LOC100996291


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.2638 non-coding 
CPAT coding probability 77.08% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01993:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC087645.1-1:1
4.0 lnc-AC087645.1-1:1
4.1 lnc-AC087645.1-1:1
5.0 lnc-AC087645.1-1:1
5.1 LINC01993:3
5.2 LINC01993:5