Transcript: LINC01996:5

Basic information

LNCipedia transcript ID: LINC01996:5 
HGNC Gene Symbol: LINC01996    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1996
Ensembl Gene ID: ENSG00000261863
Ensembl Transcript ID: ENST00000573270
Location (hg38): chr17:4610449-4617650
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1273 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000573270.1; RP11-141J13.5-001; OTTHUMT00000439132.1; NONHSAT145095
Alternative gene names: ENSG00000261863.1; RP11-141J13.5; OTTHUMG00000177830.1; LINC01996


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.6717 non-coding 
CPAT coding probability 15.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01996:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMTNL2-1:2
4.0 lnc-SMTNL2-1:2
4.1 lnc-SMTNL2-1:2
5.0 lnc-SMTNL2-1:2
5.1 LINC01996:3
5.2 LINC01996:5