Transcript: LINC01998:7

Basic information

LNCipedia transcript ID: LINC01998:7 
HGNC Gene Symbol: LINC01998    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1998
Ensembl Gene ID: ENSG00000243321
Ensembl Transcript ID: ENST00000464673
Location (hg38): chr3:150077494-150080117
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1967 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000464673; ENST00000464673.1; RP11-167H9.3-001; OTTHUMT00000357116.1; NONHSAT092675
Alternative gene names: ENSG00000243321; RP11-167H9.3; ENSG00000243321.1; OTTHUMG00000159740.1; ENSG00000243321.2; snoU13; ENSG00000243321.3; LINC01998


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.3611 non-coding 
CPAT coding probability 1.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01998:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PFN2-1:1
3.1 lnc-PFN2-1:1
4.0 lnc-PFN2-1:1
4.1 lnc-PFN2-1:1
5.0 lnc-PFN2-1:1
5.1 LINC01998:4
5.2 LINC01998:7