Transcript: LINC01999:5

Basic information

LNCipedia transcript ID: LINC01999:5 
HGNC Gene Symbol: LINC01999    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1999
Ensembl Gene ID: ENSG00000267772
Ensembl Transcript ID: ENST00000592917
Location (hg38): chr17:60564547-60586623
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 646 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000592917.1
Alternative gene names: ENSG00000267772.1; RP11-15E18.4; LINC01999


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -17.3302 non-coding 
CPAT coding probability 14.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01999:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PPM1D-10:2
4.1 lnc-PPM1D-10:2
5.0 lnc-PPM1D-10:2
5.1 LINC01999:3
5.2 LINC01999:5