Transcript: LINC02001:15

Basic information

LNCipedia transcript ID: LINC02001:15 
LNCipedia gene ID: LINC02001
Location (hg38): chr17:35568127-35573633
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 429 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT053109
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -156.5773 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC02001:15 no no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP2B1-2:2
4.0 lnc-AP2B1-2:2
4.1 lnc-AP2B1-2:2
5.0 lnc-AP2B1-2:2
5.1 LINC02001:9
5.2 LINC02001:15