Transcript: LINC02001:5

Basic information

LNCipedia transcript ID: LINC02001:5 
HGNC Gene Symbol: LINC02001    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2001
Ensembl Gene ID: ENSG00000267321
Ensembl Transcript ID: ENST00000638682
Location (hg38): chr17:35568109-35574843
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1504 bp
Exons: 3
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000638682.1
Alternative gene names: ENSG00000267321.2; LINC02001


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -48.534 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02001:5 yes no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 LINC02001:5
5.1 LINC02001:5
5.2 LINC02001:5