Transcript: LINC02003:8

Basic information

LNCipedia transcript ID: LINC02003:8 
HGNC Gene Symbol: LINC02003    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2003
Ensembl Gene ID: ENSG00000264026
Ensembl Transcript ID: ENST00000577573
Location (hg38): chr17:72342940-72355136
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1833 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000577573.1; RP11-1124B17.1-001; OTTHUMT00000441418.1; NONHSAT055682
Alternative gene names: ENSG00000264026.1; RP11-1124B17.1; OTTHUMG00000178301.1; LINC02003


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.6838 non-coding 
CPAT coding probability 11.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02003:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SOX9-3:1
4.0 lnc-SOX9-3:1
4.1 lnc-SOX9-3:1
5.0 lnc-SOX9-3:1
5.1 LINC02003:5
5.2 LINC02003:8