Transcript: LINC02005:4

Basic information

LNCipedia transcript ID: LINC02005:4 
HGNC Gene Symbol: LINC02005    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2005
Ensembl Gene ID: ENSG00000242741
Ensembl Transcript ID: ENST00000498832
Location (hg38): chr3:73808601-73902866
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 782 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005543; ENST00000498832; ENST00000498832.1; RP11-20B7.1-001; OTTHUMT00000352353.2; NONHSAT090485
Alternative gene names: XLOC_002705; linc-FRG2C-8; ENSG00000242741; RP11-20B7.1; ENSG00000242741.1; OTTHUMG00000158832.2; LINC02005


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.9997 non-coding 
CPAT coding probability 6.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02005:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPP4R2-1:1
3.1 lnc-PPP4R2-2:1
4.0 lnc-PPP4R2-2:1
4.1 lnc-PPP4R2-2:1
5.0 lnc-PPP4R2-2:1
5.1 LINC02005:2
5.2 LINC02005:4