Transcript: LINC02006:9

Basic information

LNCipedia transcript ID: LINC02006:9 
HGNC Gene Symbol: LINC02006    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2006
Ensembl Gene ID: ENSG00000238755
Ensembl Transcript ID: ENST00000492569
Location (hg38): chr3:153384934-153387368
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1958 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005471; ENST00000492569; ENST00000492569.1; RP11-292E2.3-001; OTTHUMT00000356568.1; NONHSAT092783
Alternative gene names: XLOC_003292; linc-TMEM14E-2; ENSG00000238755; RP11-292E2.3; ENSG00000238755.2; OTTHUMG00000159627.1; ENSG00000238755.3; RP11-23D24.2; LINC02006


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.1554 non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02006:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DHX36-2:1
3.1 lnc-DHX36-2:4
4.0 lnc-DHX36-2:4
4.1 lnc-DHX36-2:4
5.0 lnc-DHX36-2:4
5.1 LINC02006:5
5.2 LINC02006:9