Transcript: LINC02008:6

Basic information

LNCipedia transcript ID: LINC02008:6 
HGNC Gene Symbol: LINC02008    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2008
Ensembl Gene ID: ENSG00000239440
Ensembl Transcript ID: ENST00000494340
Location (hg38): chr3:81986152-82202454
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 524 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000494340; ENST00000494340.1; RP11-260O18.1-002; OTTHUMT00000352630.1; NONHSAT090627; FPKM1_group_21527_transcript_1
Alternative gene names: ENSG00000239440; RP11-260O18.1; ENSG00000239440.1; OTTHUMG00000158946.1; ENSG00000239440.5; LINC02008


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.734 non-coding 
CPAT coding probability 2.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02008:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CADM2-6:2
3.1 lnc-CADM2-6:2
4.0 lnc-CADM2-6:2
4.1 lnc-CADM2-6:2
5.0 lnc-CADM2-6:2
5.1 LINC02008:3
5.2 LINC02008:6