Transcript: LINC02015:18

Basic information

LNCipedia transcript ID: LINC02015:18 
HGNC Gene Symbol: LINC02015    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2015
Ensembl Gene ID: ENSG00000231574
Ensembl Transcript ID: ENST00000436078
RefSeq ID: NR_110826
Location (hg38): chr3:177816865-177899224
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2957 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00005441; ENST00000436078; ENST00000436078.1; RP11-91K9.1-001; OTTHUMT00000348099.1; NONHSAT093357; NR_110826; ENST00000436078.5; NR_110826.1
Alternative gene names: XLOC_002934; linc-KCNMB2-2; ENSG00000231574; RP11-91K9.1; ENSG00000231574.1; OTTHUMG00000157236.1; ENSG00000231574.5; KCCAT211; LINC02015


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.9112 non-coding 
CPAT coding probability 2.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02015:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNMB2-2:1
3.1 lnc-KCNMB2-2:1
4.0 lnc-KCNMB2-2:1
4.1 lnc-KCNMB2-1:3
5.0 lnc-KCNMB2-1:3
5.1 LINC02015:2
5.2 LINC02015:18