Transcript: LINC02020:24

Basic information

LNCipedia transcript ID: LINC02020:24 
HGNC Gene Symbol: LINC02020    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2020
Ensembl Gene ID: ENSG00000234548
Ensembl Transcript ID: ENST00000434896
Location (hg38): chr3:186440988-186450696
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 423 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005683; ENST00000434896; ENST00000434896.1; RP11-78H24.1-004; OTTHUMT00000344799.1; NONHSAT093817
Alternative gene names: XLOC_002958; linc-DNAJB11-3; ENSG00000234548; RP11-78H24.1; ENSG00000234548.1; OTTHUMG00000156616.1; ENSG00000234548.5; LINC02020


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -412.0444 non-coding 
CPAT coding probability 1.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02020:24 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DNAJB11-3:10
3.1 lnc-DNAJB11-3:10
4.0 lnc-DNAJB11-3:10
4.1 lnc-DNAJB11-3:10
5.0 lnc-DNAJB11-3:10
5.1 LINC02020:12
5.2 LINC02020:24