Transcript: LINC02040:5

Basic information

LNCipedia transcript ID: LINC02040:5 
HGNC Gene Symbol: LINC02040    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2040
Ensembl Gene ID: ENSG00000243149
Ensembl Transcript ID: ENST00000481004
Location (hg38): chr3:65174958-65193499
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 556 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005534; ENST00000481004; ENST00000481004.1; RP11-543A18.1-001; OTTHUMT00000351966.1; NONHSAT090283
Alternative gene names: XLOC_002688; linc-SLC25A26-3; ENSG00000243149; RP11-543A18.1; ENSG00000243149.1; OTTHUMG00000158734.1; LINC02040


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -232.4658 non-coding 
CPAT coding probability 1.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02040:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC25A26-2:1
3.1 lnc-SLC25A26-3:1
4.0 lnc-SLC25A26-3:1
4.1 lnc-SLC25A26-3:1
5.0 lnc-SLC25A26-3:1
5.1 LINC02040:2
5.2 LINC02040:5