Transcript: LINC02043:12

Basic information

LNCipedia transcript ID: LINC02043:12 
HGNC Gene Symbol: LINC02043    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2043
Ensembl Gene ID: ENSG00000232233
Ensembl Transcript ID: ENST00000419745
RefSeq ID: NR_125409
Location (hg38): chr3:186810880-186825521
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1832 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00005910; ENST00000419745; ENST00000419745.1; RP11-573D15.2-001; OTTHUMT00000344488.1; NONHSAT093868; NR_125409; NR_125409.1
Alternative gene names: XLOC_003361; linc-RFC4; ENSG00000232233; RP11-573D15.2; ENSG00000232233.1; OTTHUMG00000156520.1; LINC02043; LOC102724699


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 143.6967 coding 
CPAT coding probability 7.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC02043:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RFC4-1:1
3.1 lnc-RFC4-2:1
4.0 lnc-RFC4-2:1
4.1 lnc-RFC4-2:1
5.0 lnc-RFC4-2:1
5.1 LINC02043:6
5.2 LINC02043:12